R3DImageTools Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
ArchiverThis class controls the importing of RoboMet Datasets into MXA DataModel files
EmMpmInputsClass to hold the inputs to the EM-MPM algorithm implementation
EmMpmMasterThis class is the controller for running the EM-MPM segementation algorithm on MXA/HDF5 based RoboMet data
EmMpmThreadA Thread of execution that runs the EM-MPM algorithm on an input image
EmMpmThreadParametersClass that holds the inputs parameters for a Thread of execution that will run the EM-MPM algorithm, specifically the EmMpmThread class
itk::FFTShiftImageFilter< TInputImage, TOutputImage >Shift the zero-frequency components to center of the image
IR3DProgress
Author:
mjackson
pcm::MaxPhaseCorrelationOptimizer< TRegistrationMethod >Implements basic shift estimation from position of maximum peak
MosaicExporterThis class will export a complete mosaic based on a slice of a RoboMet.3D data set
PCMRegistrationThis is the master controller for the Image Registration process that uses the Phase Correlation Method (Cross Correlation using FFT) to find the 2D translation of a fixed and moving image
PCMRegistrationDataThis class encapsulates the data needed as inputs and outputs from a run of the PCM Registration class
PCMRegistrationTableHolds a list of the PCMRegistrationData objects
PCMRegistrationThreadThread of execution that uses the PCM classes to register 2 images
pcm::PhaseCorrelationImageRegistrationMethod< TFixedImage, TMovingImage >Base class for phase-correlation-based image registration
pcm::PhaseCorrelationOperator< TFixedImage, TMovingImage >Computes the spectrum ratio in phase correlation method
pcm::PhaseCorrelationOptimizer< TImage >Defines common interface for optimizers, that estimates the shift from correlation surface
QDockUtilitiesCollection of utilities that perform various checks on a QDockWidget
QGuiAlignmentMain User interface for the QGuiAlignment Program
QR3DFixedSliceBox
Author:
Michael A
QR3DMovingSliceBox
Author:
Michael A
QR3DProgress
Author:
Michael A
QR3DProgressWrapper
Author:
Michael A
QRecentFileListHolds a list of recently used files
QRegistrationThread< RegistrationType >This is a Qt based class that represents a thread of execution in which the process is the calculation of the correct "asAligned" values for each frame in a slice with no regard to the frame above or below in the z direction
R3DAboutBoxThis will display a simple dialog box that acts like an "About Box" for showing some basic information about the application being used
R3DAbstractThreadThis class serves as an abstract base class that can be used in combination with the R3DThreadGroup in order to manage threads and their associated resources in a more coherent fashion
R3DArchiverMain Window for the Qt base Data viewer
R3DCompositionRendererRenders 2 images from an MXA file so the user can manually align the images
R3DCropGrayScaleImageThis class will crop an existing image using the supplied insets
R3DEmMpmMain Window for the Qt base Data viewer
R3DFrameClass that holds information about a tile from the complete mosaic
R3DHistogramMatchedImage
Author:
Michael A
R3DImageColumn
Author:
Michael Jackson for BlueQuartz Software
R3DImageFilterBase class for other filters
R3DImageProcessingPropertiesThis class is designed to hold settings that pertain to image processing commands, filters or other operations that need to be passed to an import pipeline
R3DImportDelegateThis class handles the import of a RoboMet Bit map image into the MXA File
R3DImportProgressConcrete implementation for the IR3DImportProgress class
R3DMetaDataClass to hold all the data from the .rms files
R3DMosaicExporter/
R3DMosaicExportPropertiesThis class holds the values necessary to export a mosaic from the RoboMet file
R3DMosaicExportQThreadQThread based wrapper class that calls the MosaicExporter class to export mosaics
R3DPCMRegistrationGUI wrapper for the PCMRegistration program
R3DResizeGrayScaleImageThe class will resize an image using ITK algorithms
R3DRotationRegistrationGUI wrapper for the RotationRegistration program
R3DSegmentationDataClass to hold the results from segmentation algorithms
R3DSliceInfoThis class can parse a RoboMet Slice Info .csv file
R3DThreadGroupThis class helps to manage thread resources by helping to cleanup the threads when they are complete
R3DTileAlignmentGUI wrapper for the MosaicStitcher program
RotationRegistrationThis is the master controller for the Rotation Registration process
RotationRegistrationData
Author:
Michael A
RotationRegistrationTableHolds a list of the RotationRegistrationData objects
RotationRegistrationThread
Author:
Michael Jackson For Bluequartz Software
TileStructure to hold the values of a 'Tile'
TileAlignmentThis class will walk through a RoboMet.3D MXA data file and recalculate new values for the 'AsAligned' attribute for each frame
TileAlignmentThreadThis class will calculate the correct "AsAligned" micron values for every image frame within a give slice using basic image registration methods
ZeissTagMappingThis class is used to map values from the Zeiss XML file to and from human readable values
ZeissTileInfoThis class holds information about a specific Image frame as parsed from the RoboMet XML file
ZeissXMLReaderThis class reads the xml file that is produced by the Zeiss software during an image export

Generated on Fri Aug 28 14:04:33 2009 for R3DImageTools by  doxygen 1.5.2